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TCR-NP: a novel approach to prioritize T-cell Receptor repertoire network properties

https://doi.org/10.48130/stati-0024-0003

Banerjee, Shilpika; Le, Phi; Yang, Hai; Zhang, Li; He, Tao (December 2024, Statistics Innovation)

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Snapshot Metrics Are Not Enough: Analyzing Software Repositories with Longitudinal Metrics

https://doi.org/10.1145/3551349.3559517

Synovic, Nicholas M.; Hyatt, Matt; Sethi, Rohan; Thota, Sohini; Shilpika; Miller, Allan J.; Jiang, Wenxin; Amobi, Emmanuel S.; Pinderski, Austin; Läufer, Konstantin; et al (October 2022, Proceedings of the 37th IEEE/ACM International Conference on Automated Software Engineering)

Software metrics capture information about software development processes and products. These metrics support decision-making, e.g., in team management or dependency selection. However, existing metrics tools measure only a snapshot of a software project. Little attention has been given to enabling engineers to reason about metric trends over time—longitudinal metrics that give insight about process, not just product. In thiswork,we present PRIME (PRocess MEtrics), a tool to compute and visualize process metrics. The currently-supported metrics include productivity, issue density, issue spoilage, and bus factor.We illustrate the value of longitudinal data and conclude with a research agenda. The tool’s demo video can be watched at https://bit.ly/ase2022-prime. Source code can be found at https://github.com/SoftwareSystemsLaboratory/prime.
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Staged Animation Strategies for Online Dynamic Networks

https://doi.org/10.1109/TVCG.2020.3030385

Crnovrsanin, Tarik; Shilpika; Chandrasegaran, Senthil; Ma, Kwan-Liu (February 2021, IEEE Transactions on Visualization and Computer Graphics)

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A Visual Analytics Framework for Reviewing Multivariate Time-Series Data with Dimensionality Reduction

https://doi.org/10.1109/TVCG.2020.3028889

Fujiwara, Takanori; Shilpika; Sakamoto, Naohisa; Nonaka, Jorji; Yamamoto, Keiji; Ma, Kwan-Liu (February 2021, IEEE Transactions on Visualization and Computer Graphics)

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Translational Neuroelectronics

https://doi.org/10.1002/adfm.201909165

Jastrzebska‐Perfect, Patricia; Chowdhury, Shilpika; Spyropoulos, George D.; Zhao, Zifang; Cea, Claudia; Gelinas, Jennifer N.; Khodagholy, Dion (July 2020, Advanced Functional Materials)
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